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Commit 4ddf575d authored by Benedikt Zoennchen's avatar Benedikt Zoennchen
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fix an error in CLLinkedCell: wrong memory allocation.

parent 019afe2b
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Showing with 149 additions and 20 deletions
VadereUtils/resources/Particles.cl
View file @ 4ddf575d
......@@ -15,6 +15,7 @@
// Common definitions
////////////////////////////////////////////////////////////////////////////////
#define UMAD(a, b, c) ( (a) * (b) + (c) )
//#define LOCAL_SIZE_LIMIT 512U
typedef struct{
float x;
......@@ -321,7 +322,7 @@ __kernel void collide(
////////////////////////////////////////////////////////////////////////////////
// Monolithic bitonic sort kernel for short arrays fitting into local memory
////////////////////////////////////////////////////////////////////////////////
__kernel void bitonicSortLocal(
/*__kernel void bitonicSortLocal1(
__global uint *d_DstKey,
__global uint *d_DstVal,
__global uint *d_SrcKey,
......@@ -332,8 +333,7 @@ __kernel void bitonicSortLocal(
__local uint *l_val
){
uint LOCAL_SIZE_LIMIT = get_local_size(0) * 2;
//Offset to the beginning of subbatch and load data
//Offset to the beginning of subarray and load data
d_SrcKey += get_group_id(0) * LOCAL_SIZE_LIMIT + get_local_id(0);
d_SrcVal += get_group_id(0) * LOCAL_SIZE_LIMIT + get_local_id(0);
d_DstKey += get_group_id(0) * LOCAL_SIZE_LIMIT + get_local_id(0);
......@@ -343,6 +343,66 @@ __kernel void bitonicSortLocal(
l_key[get_local_id(0) + (LOCAL_SIZE_LIMIT / 2)] = d_SrcKey[(LOCAL_SIZE_LIMIT / 2)];
l_val[get_local_id(0) + (LOCAL_SIZE_LIMIT / 2)] = d_SrcVal[(LOCAL_SIZE_LIMIT / 2)];
uint comparatorI = get_global_id(0) & ((LOCAL_SIZE_LIMIT / 2) - 1);
for(uint size = 2; size < LOCAL_SIZE_LIMIT; size <<= 1){
//Bitonic merge
uint ddd = (comparatorI & (size / 2)) != 0;
for(uint stride = size / 2; stride > 0; stride >>= 1){
barrier(CLK_LOCAL_MEM_FENCE);
uint pos = 2 * get_local_id(0) - (get_local_id(0) & (stride - 1));
ComparatorLocal(
&l_key[pos + 0], &l_val[pos + 0],
&l_key[pos + stride], &l_val[pos + stride],
ddd
);
}
}
//Odd / even arrays of LOCAL_SIZE_LIMIT elements
//sorted in opposite directions
{
uint ddd = (get_group_id(0) & 1);
for(uint stride = LOCAL_SIZE_LIMIT / 2; stride > 0; stride >>= 1){
barrier(CLK_LOCAL_MEM_FENCE);
uint pos = 2 * get_local_id(0) - (get_local_id(0) & (stride - 1));
ComparatorLocal(
&l_key[pos + 0], &l_val[pos + 0],
&l_key[pos + stride], &l_val[pos + stride],
ddd
);
}
}
barrier(CLK_LOCAL_MEM_FENCE);
d_DstKey[ 0] = l_key[get_local_id(0) + 0];
d_DstVal[ 0] = l_val[get_local_id(0) + 0];
d_DstKey[(LOCAL_SIZE_LIMIT / 2)] = l_key[get_local_id(0) + (LOCAL_SIZE_LIMIT / 2)];
d_DstVal[(LOCAL_SIZE_LIMIT / 2)] = l_val[get_local_id(0) + (LOCAL_SIZE_LIMIT / 2)];
}*/
__kernel void bitonicSortLocal(
__global uint *d_DstKey,
__global uint *d_DstVal,
__global uint *d_SrcKey,
__global uint *d_SrcVal,
uint arrayLength,
uint dir,
__local uint *l_key,
__local uint *l_val
){
uint LOCAL_SIZE_LIMIT = get_local_size(0) * 2;
//Offset to the beginning of subbatch and load data
d_SrcKey += get_local_id(0);
d_SrcVal += get_local_id(0);
d_DstKey += get_local_id(0);
d_DstVal += get_local_id(0);
l_key[get_local_id(0) + 0] = d_SrcKey[ 0];
l_val[get_local_id(0) + 0] = d_SrcVal[ 0];
l_key[get_local_id(0) + (LOCAL_SIZE_LIMIT / 2)] = d_SrcKey[(LOCAL_SIZE_LIMIT / 2)];
l_val[get_local_id(0) + (LOCAL_SIZE_LIMIT / 2)] = d_SrcVal[(LOCAL_SIZE_LIMIT / 2)];
for(uint size = 2; size < arrayLength; size <<= 1){
//Bitonic merge
uint ddd = dir ^ ( (get_local_id(0) & (size / 2)) != 0 );
......
VadereUtils/src/org/vadere/util/opencl/CLLinkedCell.java
View file @ 4ddf575d
......@@ -424,8 +424,8 @@ public class CLLinkedCell {
CLInfo.checkCLError(clSetKernelArg(clFindCellBoundsAndReorder, 6, (max_work_group_size+1) * 4)); // local memory
CLInfo.checkCLError(clSetKernelArg1i(clFindCellBoundsAndReorder, 7, numberOfElements));
clGlobalWorkSize.put(0, numberOfElements);
clLocalWorkSize.put(0, max_work_group_size);
clGlobalWorkSize.put(0, Math.min(max_work_group_size, numberOfElements));
clLocalWorkSize.put(0, Math.min(max_work_group_size, numberOfElements));
//TODO: local work size? + check 2^n constrain!
CLInfo.checkCLError(clEnqueueNDRangeKernel(clQueue, clFindCellBoundsAndReorder, 1, null, clGlobalWorkSize, clLocalWorkSize, null, null));
}
......@@ -451,10 +451,9 @@ public class CLLinkedCell {
CLInfo.checkCLError(clSetKernelArg1p(clBitonicSortLocal, 2, clKeysIn));
CLInfo.checkCLError(clSetKernelArg1p(clBitonicSortLocal, 3, clValuesIn));
CLInfo.checkCLError(clSetKernelArg1i(clBitonicSortLocal, 4, numberOfElements));
//TODO: check the hard coded 1, and the waiting of the queue
CLInfo.checkCLError(clSetKernelArg1i(clBitonicSortLocal, 5, 1));
CLInfo.checkCLError(clSetKernelArg(clBitonicSortLocal, 6, keys.length * 4)); // local memory
CLInfo.checkCLError(clSetKernelArg(clBitonicSortLocal, 7, keys.length * 4)); // local memory
CLInfo.checkCLError(clSetKernelArg1i(clBitonicSortLocal, 5, dir));
CLInfo.checkCLError(clSetKernelArg(clBitonicSortLocal, 6, numberOfElements * 4)); // local memory
CLInfo.checkCLError(clSetKernelArg(clBitonicSortLocal, 7, numberOfElements * 4)); // local memory
clGlobalWorkSize.put(0, numberOfElements / 2);
clLocalWorkSize.put(0, numberOfElements / 2);
......
VadereUtils/tests/org/vadere/util/math/TestCLLinkedList.java
View file @ 4ddf575d
......@@ -29,29 +29,51 @@ public class TestCLLinkedList {
public void setUp() throws Exception {}
@Test
public void testCalcHash() throws IOException, OpenCLException {
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(1024, new VRectangle(0, 0, 10, 10), 1);
public void testCalcHashSmall() throws IOException, OpenCLException {
int size = 8;
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(size, new VRectangle(0, 0, 10, 10), 1);
ArrayList<VPoint> positions = new ArrayList<>();
for(int i = 0; i < 1024; i++) {
for(int i = 0; i < size; i++) {
positions.add(new VPoint(random.nextDouble() * 10,random.nextDouble() * 10));
}
int[] hasehs = clUniformHashedGrid.calcHashes(positions);
assertEquals(hasehs.length, positions.size());
logger.info("number of cells = " + clUniformHashedGrid.getGridSize()[0] * clUniformHashedGrid.getGridSize()[1]);
//logger.info("number of cells = " + clUniformHashedGrid.getGridSize()[0] * clUniformHashedGrid.getGridSize()[1]);
for(int i = 0; i < hasehs.length; i++) {
int hash = getGridHash(getGridPosition(positions.get(i), clUniformHashedGrid.getCellSize(), clUniformHashedGrid.getWorldOrign()), clUniformHashedGrid.getGridSize());
assertEquals(hasehs[i], hash);
logger.info("hash = " + hash);
//logger.info("hash = " + hash);
}
}
@Test
public void testCalcAndSortHash() throws IOException, OpenCLException {
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(1024, new VRectangle(0, 0, 10, 10), 1);
public void testCalcHashLarge() throws IOException, OpenCLException {
int size = 32768; // 2^15
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(size, new VRectangle(0, 0, 10, 10), 1);
ArrayList<VPoint> positions = new ArrayList<>();
for(int i = 0; i < 1024; i++) {
for(int i = 0; i < size; i++) {
positions.add(new VPoint(random.nextDouble() * 10,random.nextDouble() * 10));
}
int[] hasehs = clUniformHashedGrid.calcHashes(positions);
assertEquals(hasehs.length, positions.size());
//logger.info("number of cells = " + clUniformHashedGrid.getGridSize()[0] * clUniformHashedGrid.getGridSize()[1]);
for(int i = 0; i < hasehs.length; i++) {
int hash = getGridHash(getGridPosition(positions.get(i), clUniformHashedGrid.getCellSize(), clUniformHashedGrid.getWorldOrign()), clUniformHashedGrid.getGridSize());
assertEquals(hasehs[i], hash);
//logger.info("hash = " + hash);
}
}
@Test
public void testCalcAndSortHashSmall() throws IOException, OpenCLException {
int size = 8;
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(size, new VRectangle(0, 0, 10, 10), 1);
ArrayList<VPoint> positions = new ArrayList<>();
for(int i = 0; i < size; i++) {
positions.add(new VPoint(random.nextDouble() * 10,random.nextDouble() * 10));
}
int[] hasehs = clUniformHashedGrid.calcSortedHashes(positions);
......@@ -71,10 +93,58 @@ public class TestCLLinkedList {
}
@Test
public void testGridCell() throws IOException, OpenCLException {
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(1024, new VRectangle(0, 0, 10, 10), 1);
public void testCalcAndSortHashLarge() throws IOException, OpenCLException {
int size = 32768; // 2^15
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(size, new VRectangle(0, 0, 10, 10), 1);
ArrayList<VPoint> positions = new ArrayList<>();
for(int i = 0; i < size; i++) {
positions.add(new VPoint(random.nextDouble() * 10,random.nextDouble() * 10));
}
int[] hasehs = clUniformHashedGrid.calcSortedHashes(positions);
assertEquals(hasehs.length, positions.size());
int[] expectedHashes = new int[positions.size()];
for(int i = 0; i < hasehs.length; i++) {
int hash = getGridHash(getGridPosition(positions.get(i), clUniformHashedGrid.getCellSize(), clUniformHashedGrid.getWorldOrign()), clUniformHashedGrid.getGridSize());
expectedHashes[i] = hash;
}
Arrays.sort(expectedHashes);
for(int i = 0; i < hasehs.length; i++) {
assertEquals(hasehs[i], expectedHashes[i]);
}
}
@Test
public void testGridCellSmall() throws IOException, OpenCLException {
int size = 8;
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(size, new VRectangle(0, 0, 10, 10), 1);
ArrayList<VPoint> positions = new ArrayList<>();
for(int i = 0; i < size; i++) {
positions.add(new VPoint(random.nextDouble() * 10,random.nextDouble() * 10));
}
CLLinkedCell.LinkedCell gridCells = clUniformHashedGrid.calcLinkedCell(positions);
int numberOfCells = clUniformHashedGrid.getGridSize()[0] * clUniformHashedGrid.getGridSize()[1];
for(int cell = 0; cell < numberOfCells; cell++) {
int cellStart = gridCells.cellStarts[cell];
int cellEnd = gridCells.cellEnds[cell];
for(int i = cellStart; i < cellEnd; i++) {
VPoint point = new VPoint(gridCells.reorderedPositions[i*2], gridCells.reorderedPositions[i*2+1]);
int[] gridPosition = getGridPosition(point, clUniformHashedGrid.getCellSize(), clUniformHashedGrid.getWorldOrign());
int gridHash = getGridHash(gridPosition, clUniformHashedGrid.getGridSize());
assertEquals(gridHash, cell);
}
}
}
@Test
public void testGridCellLarge() throws IOException, OpenCLException {
int size = 32768;
CLLinkedCell clUniformHashedGrid = new CLLinkedCell(size, new VRectangle(0, 0, 10, 10), 1);
ArrayList<VPoint> positions = new ArrayList<>();
for(int i = 0; i < 1024; i++) {
for(int i = 0; i < size; i++) {
positions.add(new VPoint(random.nextDouble() * 10,random.nextDouble() * 10));
}
CLLinkedCell.LinkedCell gridCells = clUniformHashedGrid.calcLinkedCell(positions);
......
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