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Code cleaning and order of time and state update in Simulation.run()

Daniel Lehmberg requested to merge readable_simulation_run into master

Merge request to improve the readability of the main simulation run and clarify aspects?

  • Why is processManager.update after step++ and refreshing the simulationState state? This causes step in output to start at 1 and not 0. Could the processManager.update also be in updateCallbacks ? (cc @hm-mgoedel )
Edited by Daniel Lehmberg

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